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For example, you can search a protein query sequence against a database with phmmer, or do an iterative search with jackhmmer. In the past, this strength came at significant computational expense, but as of the new HMMER3 project, HMMER is now essentially as fast as BLAST. midomi.com find and discover music and people. Use your voice to instantly connect to your favorite music, and to a community of people that share your musical interests. Hidden Markov Model (HMM) is a statistical Markov model in which the system being modeled is assumed to be a Markov process – call it – with unobservable ("hidden") states. HMM assumes that there is another process Y {\displaystyle Y} whose behavior "depends" on X {\displaystyle X} .

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The email option allows the user to be notified by email when the hmmpfam search is completed. The email will contain a link to the results.

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64 hmmlogo - given an HMM, produce data required to build an 2011-10-20 · Sun Y, Buhler J (2007) Designing patterns for profile HMM search. Bioinformatics 23: e36–e43. View Article Google Scholar 25. Sun Y, Buhler J (2009) Designing patterns and profiles for faster HMM search. IEEE/ACM Trans Comput Biol Bioinform 6: 232–243.

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